STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpcTProtein of unknown function DUF1001; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. (185 aa)    
Predicted Functional Partners:
cpcB
Phycocyanin beta chain phycocyanin beta.
  
  
 0.874
cpcA
Phycocyanin a subunit.
  
  
 0.872
cpcE
PBS lyase HEAT-like protein repeat protein.
  
  
 0.849
cpcF
PBS lyase HEAT domain-containing protein repeat-containing protein.
  
  
 0.836
cpcC-1
Phycocyanin-associated rod linker protein; Belongs to the phycobilisome linker protein family.
 
  
 0.834
cpcC-2
Phycocyanin-associated rod linker protein; Belongs to the phycobilisome linker protein family.
 
  
 0.832
apcE
Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
  
  
  0.825
cpcS
Hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
 
  
 0.796
apcF
Allophycocyanin subunit beta.
  
  
 0.792
apcB-1
Allophycocyanin subunit beta.
  
  
 0.790
Your Current Organism:
Gloeomargarita lithophora
NCBI taxonomy Id: 1188229
Other names: Candidatus Gloeomargarita lithophora D10, G. lithophora Alchichica-D10, Gloeomargarita lithophora Alchichica-D10, Gloeomargarita lithophora PMC 919.15
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