STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbFalpha-D-glucose-1-phosphate cytidylyltransferase. (256 aa)    
Predicted Functional Partners:
rfbG
CDP-glucose 4,6-dehydratase.
 
 0.985
rfbC
dTDP-6-deoxy-L-mannose-dehydrogenase.
 
 
 0.963
APB33172.1
C-methyltransferase.
 
     0.885
APB33171.1
Perosamine synthetase.
  
    0.789
APB35147.1
NAD-dependent epimerase/dehydratase.
 
  0.745
APB32378.1
Trehalose-phosphatase.
   
 
  0.702
APB32463.1
NAD dependent epimerase/dehydratase family.
   
  0.665
pgm
Phosphoglucomutase.
   
 0.625
malQ
4-alpha-glucanotransferase.
    
 0.580
APB35217.1
Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
   
 
  0.579
Your Current Organism:
Gloeomargarita lithophora
NCBI taxonomy Id: 1188229
Other names: Candidatus Gloeomargarita lithophora D10, G. lithophora Alchichica-D10, Gloeomargarita lithophora Alchichica-D10, Gloeomargarita lithophora PMC 919.15
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