STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ferFerredoxin. (107 aa)    
Predicted Functional Partners:
APB34070.1
Hypothetical protein.
 
     0.910
APB34069.1
Hypothetical protein.
 
     0.834
APB32461.1
Hypothetical protein.
  
     0.771
APB35313.1
GUN4 domain protein.
  
     0.768
APB32462.1
Nuclear pore complex component (sc Seh1).
  
     0.767
APB33724.1
Hypothetical protein.
  
     0.765
psaE
Photosystem I reaction centre subunit IV/PsaE; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family.
  
     0.739
APB32492.1
Hypothetical protein.
  
     0.719
APB35248.1
Hypothetical protein.
  
     0.716
psbO
Photosystem II manganese-stabilizing protein PsbO.
  
     0.710
Your Current Organism:
Gloeomargarita lithophora
NCBI taxonomy Id: 1188229
Other names: Candidatus Gloeomargarita lithophora D10, G. lithophora Alchichica-D10, Gloeomargarita lithophora Alchichica-D10, Gloeomargarita lithophora PMC 919.15
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