STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APB34635.1Hypothetical protein; Coding region disrupted by sequencing gap. (259 aa)    
Predicted Functional Partners:
APB34637.1
Putative kinase.
     0.994
otsB
HAD family hydrolase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.862
APB32378.1
Trehalose-phosphatase.
   
    0.862
APB33666.1
Hypothetical protein.
   
    0.838
APB34634.1
Universal stress protein family, putative.
  
    0.818
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
       0.709
APB33551.1
HAD-superfamily hydrolase.
  
    0.647
APB34281.1
HAD superfamily P-type ATPase.
 
    0.596
APB34263.1
Histidine kinase domain protein.
   
    0.554
APB34088.1
Twin-arginine translocation pathway signal protein.
   
    0.527
Your Current Organism:
Gloeomargarita lithophora
NCBI taxonomy Id: 1188229
Other names: Candidatus Gloeomargarita lithophora D10, G. lithophora Alchichica-D10, Gloeomargarita lithophora Alchichica-D10, Gloeomargarita lithophora PMC 919.15
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