STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APB34695.1Hypothetical protein. (123 aa)    
Predicted Functional Partners:
lpxB-2
Cyanobacteria-specific protein related to lipidA disaccharide synthetase.
 
     0.780
APB32825.1
Protein of unknown function, DUF1997.
  
     0.773
APB33004.1
Hypothetical protein.
  
     0.773
APB33269.1
Hypothetical protein.
  
     0.771
APB32311.1
Hypothetical protein.
  
     0.770
APB33669.1
Hypothetical protein.
  
     0.767
APB35249.1
Hypothetical protein.
  
     0.761
APB34965.1
Hypothetical protein.
  
     0.759
APB34819.1
Hypothetical protein.
  
     0.756
APB33344.1
Hypothetical protein.
  
     0.752
Your Current Organism:
Gloeomargarita lithophora
NCBI taxonomy Id: 1188229
Other names: Candidatus Gloeomargarita lithophora D10, G. lithophora Alchichica-D10, Gloeomargarita lithophora Alchichica-D10, Gloeomargarita lithophora PMC 919.15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.