STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APB34874.1Prokaryotic N-terminal methylation motif domain protein. (229 aa)    
Predicted Functional Partners:
APB34873.1
Hypothetical protein.
       0.769
APB34875.1
Type IV pilin.
       0.734
gspE
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
  
 0.685
pilB
Pilus assembly protein.
  
 0.685
pilC
Type II secretion system protein.
  
  
 0.661
APB34876.1
Hypothetical protein.
       0.660
comEC
ComEC/Rec2-related protein.
  
  
 0.563
APB34877.1
Uncharacterized protein conserved in cyanobacteria.
       0.452
Your Current Organism:
Gloeomargarita lithophora
NCBI taxonomy Id: 1188229
Other names: Candidatus Gloeomargarita lithophora D10, G. lithophora Alchichica-D10, Gloeomargarita lithophora Alchichica-D10, Gloeomargarita lithophora PMC 919.15
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