STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APB35199.1Hypothetical protein. (1118 aa)    
Predicted Functional Partners:
APB33718.1
Von Willebrand factor type A.
 
     0.741
APB33049.1
Rubrerythrin.
  
     0.713
APB35198.1
UDP-glucose 4-epimerase.
       0.658
APB34955.1
Synaptonemal complex 1.
  
     0.606
APB33191.1
Uncharacterized protein conserved in cyanobacteria; Coding region disrupted by sequencing gap.
  
     0.567
APB35200.1
Hypothetical protein.
       0.566
APB33189.1
Uncharacterized protein conserved in cyanobacteria; Coding region disrupted by sequencing gap.
  
     0.558
APB32989.1
Beta-propeller domains of methanol dehydrogenase type.
  
  
 0.555
APB35169.1
GCN5-like N-acetyltransferase.
  
     0.551
APB32355.1
Uncharacterized protein conserved in cyanobacteria.
  
     0.523
Your Current Organism:
Gloeomargarita lithophora
NCBI taxonomy Id: 1188229
Other names: Candidatus Gloeomargarita lithophora D10, G. lithophora Alchichica-D10, Gloeomargarita lithophora Alchichica-D10, Gloeomargarita lithophora PMC 919.15
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