STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hupDNA-binding histone-like protein HU; Belongs to the bacterial histone-like protein family. (98 aa)    
Predicted Functional Partners:
topA
DNA topoisomerase I.
  
  
 0.867
engA
GTP-binding protein EngA.
   
   0.775
cmk
Cytidylate kinase.
  
    0.762
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.728
dnaA
Chromosomal replication initiator protein; Belongs to the DnaA family.
   
 
 0.690
metS
Methionyl-tRNA synthetase (Methionine-tRNAligase, MetRS).
  
   0.619
polA
DNA polymerase I, 5'-3' exonuclease.
   
 
 0.600
nusA
Transcription elongation protein NusA; Participates in both transcription termination and antitermination.
   
   0.526
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
  
 0.521
dnaJ
Chaperone protein DnaJ.
   
 
 0.451
Your Current Organism:
Mycoplasma alkalescens
NCBI taxonomy Id: 1188234
Other names: M. alkalescens 14918, Mycoplasma alkalescens 14918
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.