STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxBThioredoxin reductase. (305 aa)    
Predicted Functional Partners:
trxA
Thioredoxin.
  
 0.991
nifS
Aminotransferase protein S (Nitrogen fixation protein NifS).
  
 
  0.974
MALK_0990
Hypothetical protein.
     
 0.837
pdhD-2
Dihydrolipoamide dehydrogenase.
  
 0.793
MALK_0980
Hypothetical protein, predicted lipoprotein.
       0.776
lgt
Prolipoprotein diacylglyceryl transferase.
       0.713
metS
Methionyl-tRNA synthetase (Methionine-tRNAligase, MetRS).
  
 
 0.674
uvrA
Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
     
 0.662
pheT
Phenylalanyl-tRNA synthetase beta chain (PheT).
   
 
 0.629
pdhD-1
Dihydrolipoamide dehydrogenase.
  
0.626
Your Current Organism:
Mycoplasma alkalescens
NCBI taxonomy Id: 1188234
Other names: M. alkalescens 14918, Mycoplasma alkalescens 14918
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.