infB protein (Mycoplasma alkalescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

infB

Translation initiation factor IF-2. (601 aa)

Predicted Functional Partners:

rplO

0.996

rplB

0.996

rpsB

0.996

rpsD

0.995

rplP

0.995

rpsC

0.995

rpsK

0.994

rplD

0.994

rpsE

0.993

rplC

0.993

Your Current Organism:

Mycoplasma alkalescens

NCBI taxonomy Id: 1188234
Other names: M. alkalescens 14918, Mycoplasma alkalescens 14918

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
infB	rplB	MALK_2690	MALK_1880	Translation initiation factor IF-2.	50S ribosomal protein L2.	0.996
infB	rplC	MALK_2690	MALK_1910	Translation initiation factor IF-2.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.993
infB	rplD	MALK_2690	MALK_1900	Translation initiation factor IF-2.	50S ribosomal protein L4.	0.994
infB	rplO	MALK_2690	MALK_1730	Translation initiation factor IF-2.	50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.996
infB	rplP	MALK_2690	MALK_1840	Translation initiation factor IF-2.	50S ribosomal protein L16.	0.995
infB	rpsB	MALK_2690	MALK_3090	Translation initiation factor IF-2.	30S ribosomal protein S2.	0.996
infB	rpsC	MALK_2690	MALK_1850	Translation initiation factor IF-2.	30S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.995
infB	rpsD	MALK_2690	MALK_1060	Translation initiation factor IF-2.	30S ribosomal protein S4; Belongs to the universal ribosomal protein uS4 family.	0.995
infB	rpsE	MALK_2690	MALK_1740	Translation initiation factor IF-2.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.993
infB	rpsK	MALK_2690	MALK_1660	Translation initiation factor IF-2.	30S ribosomal protein S11.	0.994
rplB	infB	MALK_1880	MALK_2690	50S ribosomal protein L2.	Translation initiation factor IF-2.	0.996
rplB	rplC	MALK_1880	MALK_1910	50S ribosomal protein L2.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.999
rplB	rplD	MALK_1880	MALK_1900	50S ribosomal protein L2.	50S ribosomal protein L4.	0.999
rplB	rplO	MALK_1880	MALK_1730	50S ribosomal protein L2.	50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.999
rplB	rplP	MALK_1880	MALK_1840	50S ribosomal protein L2.	50S ribosomal protein L16.	0.999
rplB	rpsB	MALK_1880	MALK_3090	50S ribosomal protein L2.	30S ribosomal protein S2.	0.997
rplB	rpsC	MALK_1880	MALK_1850	50S ribosomal protein L2.	30S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.999
rplB	rpsD	MALK_1880	MALK_1060	50S ribosomal protein L2.	30S ribosomal protein S4; Belongs to the universal ribosomal protein uS4 family.	0.997
rplB	rpsE	MALK_1880	MALK_1740	50S ribosomal protein L2.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.998
rplB	rpsK	MALK_1880	MALK_1660	50S ribosomal protein L2.	30S ribosomal protein S11.	0.998