nrnA protein (Mycoplasma alkalescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

nrnA

Hypothetical protein, putative MgPA-like protein. (328 aa)

Predicted Functional Partners:

MALK_3570

0.995

dhh

0.977

mutM

0.453

mutS

0.423

Your Current Organism:

Mycoplasma alkalescens

NCBI taxonomy Id: 1188234
Other names: M. alkalescens 14918, Mycoplasma alkalescens 14918

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MALK_3570	dhh	MALK_3570	MALK_5460	Hypothetical protein, putative phosphoesterase.	Phosphoesterase DHH family protein.	0.977
MALK_3570	mutM	MALK_3570	MALK_3590	Hypothetical protein, putative phosphoesterase.	Foramidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.	0.453
MALK_3570	mutS	MALK_3570	MALK_3580	Hypothetical protein, putative phosphoesterase.	Hypothetical protein, putative Smr protein.	0.423
MALK_3570	nrnA	MALK_3570	MALK_3560	Hypothetical protein, putative phosphoesterase.	Hypothetical protein, putative MgPA-like protein.	0.995
dhh	MALK_3570	MALK_5460	MALK_3570	Phosphoesterase DHH family protein.	Hypothetical protein, putative phosphoesterase.	0.977
dhh	nrnA	MALK_5460	MALK_3560	Phosphoesterase DHH family protein.	Hypothetical protein, putative MgPA-like protein.	0.977
mutM	MALK_3570	MALK_3590	MALK_3570	Foramidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.	Hypothetical protein, putative phosphoesterase.	0.453
mutM	mutS	MALK_3590	MALK_3580	Foramidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.	Hypothetical protein, putative Smr protein.	0.773
mutM	nrnA	MALK_3590	MALK_3560	Foramidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.	Hypothetical protein, putative MgPA-like protein.	0.453
mutS	MALK_3570	MALK_3580	MALK_3570	Hypothetical protein, putative Smr protein.	Hypothetical protein, putative phosphoesterase.	0.423
mutS	mutM	MALK_3580	MALK_3590	Hypothetical protein, putative Smr protein.	Foramidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.	0.773
mutS	nrnA	MALK_3580	MALK_3560	Hypothetical protein, putative Smr protein.	Hypothetical protein, putative MgPA-like protein.	0.423
nrnA	MALK_3570	MALK_3560	MALK_3570	Hypothetical protein, putative MgPA-like protein.	Hypothetical protein, putative phosphoesterase.	0.995
nrnA	dhh	MALK_3560	MALK_5460	Hypothetical protein, putative MgPA-like protein.	Phosphoesterase DHH family protein.	0.977
nrnA	mutM	MALK_3560	MALK_3590	Hypothetical protein, putative MgPA-like protein.	Foramidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.	0.453
nrnA	mutS	MALK_3560	MALK_3580	Hypothetical protein, putative MgPA-like protein.	Hypothetical protein, putative Smr protein.	0.423