Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| MALK_3770 | fmt | MALK_3770 | MALK_3780 | Hypothetical protein, predicted transmembrane protein. | Methionyl-tRNA formyltransferase. | 0.590 |
| MALK_3770 | rsmD | MALK_3770 | MALK_3760 | Hypothetical protein, predicted transmembrane protein. | Hypothetical protein, putative RNA methyltransferase, RsmD family. | 0.536 |
| MALK_3770 | ung | MALK_3770 | MALK_3790 | Hypothetical protein, predicted transmembrane protein. | Uracil-DNA glycosylase; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family. | 0.590 |
| dnaN | polA | MALK_3340 | MALK_5390 | DNA polymerase III beta chain. | DNA polymerase I, 5'-3' exonuclease. | 0.999 |
| dnaN | recA | MALK_3340 | MALK_4890 | DNA polymerase III beta chain. | Recombinase A. | 0.933 |
| dnaN | ung | MALK_3340 | MALK_3790 | DNA polymerase III beta chain. | Uracil-DNA glycosylase; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family. | 0.858 |
| fmt | MALK_3770 | MALK_3780 | MALK_3770 | Methionyl-tRNA formyltransferase. | Hypothetical protein, predicted transmembrane protein. | 0.590 |
| fmt | pepA-1 | MALK_3780 | MALK_3800 | Methionyl-tRNA formyltransferase. | Aminopeptidase (Leucine aminopeptidase). | 0.502 |
| fmt | pepA-2 | MALK_3780 | MALK_3810 | Methionyl-tRNA formyltransferase. | Aminopeptidase (Leucine aminopeptidase). | 0.474 |
| fmt | rsmD | MALK_3780 | MALK_3760 | Methionyl-tRNA formyltransferase. | Hypothetical protein, putative RNA methyltransferase, RsmD family. | 0.441 |
| fmt | ung | MALK_3780 | MALK_3790 | Methionyl-tRNA formyltransferase. | Uracil-DNA glycosylase; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family. | 0.792 |
| mutM | nfo | MALK_3590 | MALK_0250 | Foramidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.487 |
| mutM | polA | MALK_3590 | MALK_5390 | Foramidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | DNA polymerase I, 5'-3' exonuclease. | 0.970 |
| mutM | recA | MALK_3590 | MALK_4890 | Foramidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | Recombinase A. | 0.557 |
| mutM | ung | MALK_3590 | MALK_3790 | Foramidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | Uracil-DNA glycosylase; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family. | 0.434 |
| nfo | mutM | MALK_0250 | MALK_3590 | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | Foramidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.487 |
| nfo | polA | MALK_0250 | MALK_5390 | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | DNA polymerase I, 5'-3' exonuclease. | 0.795 |
| nfo | recA | MALK_0250 | MALK_4890 | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | Recombinase A. | 0.583 |
| nfo | ung | MALK_0250 | MALK_3790 | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | Uracil-DNA glycosylase; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family. | 0.652 |
| pepA-1 | fmt | MALK_3800 | MALK_3780 | Aminopeptidase (Leucine aminopeptidase). | Methionyl-tRNA formyltransferase. | 0.502 |
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