STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifUAminotransferase protein U (Nitrogen fixation protein NifU). (141 aa)    
Predicted Functional Partners:
nifS
Aminotransferase protein S (Nitrogen fixation protein NifS).
  
 0.999
dnaK
Chaperone protein DnaK (HSP70).
  
 
 0.959
nadD
Putative nicotinate-nucleotide adenylyltransferase.
       0.839
dinP
DNA polymerase IV (DinB).
       0.827
tlyA
Hemolysin A.
       0.827
nusB
Transcription termination factor NusB.
       0.827
MALK_4880
Hypothetical protein, putative metallophosphoesterase.
       0.785
recA
Recombinase A.
  
   0.665
pheT
Phenylalanyl-tRNA synthetase beta chain (PheT).
       0.577
dnaJ
Chaperone protein DnaJ.
   
 
 0.518
Your Current Organism:
Mycoplasma alkalescens
NCBI taxonomy Id: 1188234
Other names: M. alkalescens 14918, Mycoplasma alkalescens 14918
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.