STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifSAminotransferase protein S (Nitrogen fixation protein NifS). (391 aa)    
Predicted Functional Partners:
nifU
Aminotransferase protein U (Nitrogen fixation protein NifU).
  
 0.999
trxB
Thioredoxin reductase.
  
 
  0.974
nadD
Putative nicotinate-nucleotide adenylyltransferase.
       0.839
dinP
DNA polymerase IV (DinB).
  
    0.833
tlyA
Hemolysin A.
       0.827
nusB
Transcription termination factor NusB.
       0.827
MALK_4880
Hypothetical protein, putative metallophosphoesterase.
       0.785
recA
Recombinase A.
  
    0.629
pheT
Phenylalanyl-tRNA synthetase beta chain (PheT).
  
    0.602
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.583
Your Current Organism:
Mycoplasma alkalescens
NCBI taxonomy Id: 1188234
Other names: M. alkalescens 14918, Mycoplasma alkalescens 14918
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