def protein (Mycoplasma alkalescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

def

Peptide deformylase (Polypeptide deformylase). (185 aa)

Predicted Functional Partners:

metS

0.996

rplV

0.977

rplQ

0.973

tig

0.971

rpsT

0.969

rpsF

0.966

rpsP

0.962

rpmB

0.962

rplD

0.961

rplM

0.960

Your Current Organism:

Mycoplasma alkalescens

NCBI taxonomy Id: 1188234
Other names: M. alkalescens 14918, Mycoplasma alkalescens 14918

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
def	metS	MALK_6080	MALK_2470	Peptide deformylase (Polypeptide deformylase).	Methionyl-tRNA synthetase (Methionine-tRNAligase, MetRS).	0.996
def	rplD	MALK_6080	MALK_1900	Peptide deformylase (Polypeptide deformylase).	50S ribosomal protein L4.	0.961
def	rplM	MALK_6080	MALK_0130	Peptide deformylase (Polypeptide deformylase).	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.960
def	rplQ	MALK_6080	MALK_1640	Peptide deformylase (Polypeptide deformylase).	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.973
def	rplV	MALK_6080	MALK_1860	Peptide deformylase (Polypeptide deformylase).	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.977
def	rpmB	MALK_6080	MALK_3320	Peptide deformylase (Polypeptide deformylase).	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.962
def	rpsF	MALK_6080	MALK_4950	Peptide deformylase (Polypeptide deformylase).	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.966
def	rpsP	MALK_6080	MALK_1420	Peptide deformylase (Polypeptide deformylase).	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.962
def	rpsT	MALK_6080	MALK_5990	Peptide deformylase (Polypeptide deformylase).	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.969
def	tig	MALK_6080	MALK_1240	Peptide deformylase (Polypeptide deformylase).	Trigger factor (TF).	0.971
metS	def	MALK_2470	MALK_6080	Methionyl-tRNA synthetase (Methionine-tRNAligase, MetRS).	Peptide deformylase (Polypeptide deformylase).	0.996
metS	rplD	MALK_2470	MALK_1900	Methionyl-tRNA synthetase (Methionine-tRNAligase, MetRS).	50S ribosomal protein L4.	0.474
metS	rplM	MALK_2470	MALK_0130	Methionyl-tRNA synthetase (Methionine-tRNAligase, MetRS).	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.681
metS	rplQ	MALK_2470	MALK_1640	Methionyl-tRNA synthetase (Methionine-tRNAligase, MetRS).	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.633
metS	rplV	MALK_2470	MALK_1860	Methionyl-tRNA synthetase (Methionine-tRNAligase, MetRS).	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.561
metS	rpmB	MALK_2470	MALK_3320	Methionyl-tRNA synthetase (Methionine-tRNAligase, MetRS).	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.467
metS	rpsF	MALK_2470	MALK_4950	Methionyl-tRNA synthetase (Methionine-tRNAligase, MetRS).	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.582
metS	rpsP	MALK_2470	MALK_1420	Methionyl-tRNA synthetase (Methionine-tRNAligase, MetRS).	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.571
metS	tig	MALK_2470	MALK_1240	Methionyl-tRNA synthetase (Methionine-tRNAligase, MetRS).	Trigger factor (TF).	0.532
rplD	def	MALK_1900	MALK_6080	50S ribosomal protein L4.	Peptide deformylase (Polypeptide deformylase).	0.961