STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnhB-1Ribonuclease HIII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (231 aa)    
Predicted Functional Partners:
MBVG_4510
Hypothetical protein, putative COF family HAD hydrolase.
  
  
 0.815
MBVG_4530
Hypothetical protein, putative helicase.
       0.686
recD
Exodeoxyribonuclease V alpha chain.
     
 0.561
ftsH
Cell division protein FtsH-like protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.
       0.481
polA
DNA polymerase I: 5'-3' exonuclease domain protein.
      
 0.404
Your Current Organism:
Mycoplasma bovigenitalium
NCBI taxonomy Id: 1188235
Other names: M. bovigenitalium 51080, Mycoplasma bovigenitalium 51080
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.