STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAO34107.1Hypothetical protein. (145 aa)    
Predicted Functional Partners:
GAO34108.1
Hypothetical protein.
       0.773
pyrE_2
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.773
exoA
Exodeoxyribonuclease.
       0.571
Your Current Organism:
Ferriphaselus amnicola
NCBI taxonomy Id: 1188319
Other names: DSM 26810, F. amnicola, Ferriphaselus amnicola Kato et al. 2014, JCM 18545, beta proteobacterium OYT1, strain OYT1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.