STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN04488119_101100Virulence factor. (106 aa)    
Predicted Functional Partners:
SAMN04488119_101101
Methylenetetrahydrofolate reductase (NADPH).
 
    0.966
SAMN04488119_102129
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
     0.946
SAMN04488119_101102
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
     0.937
SAMN04488119_102399
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
    0.808
SAMN04488119_102398
DUF1638 domain-containing protein.
 
     0.804
SAMN04488119_101174
Methyltransferase; Belongs to the trimethylamine methyltransferase family.
 
     0.786
SAMN04488119_11029
Methyltransferase; Belongs to the trimethylamine methyltransferase family.
 
     0.786
SAMN04488119_103118
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
    0.752
SAMN04488119_102138
Uncharacterized protein.
  
     0.743
SAMN04488119_10199
Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
  
    0.722
Your Current Organism:
Oceanicella actignis
NCBI taxonomy Id: 1189325
Other names: Amaricoccus sp. CLW, CGMCC 1.10808 [[Pleomorphobacterium xiamenense]], DSM 22673, DSM 24423 [[Pleomorphobacterium xiamenense]], LMG 25334, LMG 26245 [[Pleomorphobacterium xiamenense]], LMG:25334, LMG:26245 [[Pleomorphobacterium xiamenense]], MCCC 1A06272 [[Pleomorphobacterium xiamenense]], O. actignis, Oceanicella actignis Albuquerque et al. 2012, Pleomorphobacterium xiamenense, Pleomorphobacterium xiamenense Yin et al. 2013, Rhodobacteraceae bacterium CLW, Rhodobacteraceae bacterium PRQ-67, Rhodobacteraceae bacterium PRQ-68, strain CLW [[Pleomorphobacterium xiamenense]], strain PRQ-67
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.