STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN04488119_10413Uncharacterized protein. (591 aa)    
Predicted Functional Partners:
SAMN04488119_10412
Geranyl-CoA carboxylase beta subunit.
 
 
 0.926
SAMN04488119_1048
TIGR03084 family protein.
 
     0.896
SAMN04488119_10410
Geranyl-CoA carboxylase alpha subunit.
  
 
 0.860
SAMN04488119_103292
Homogentisate 1,2-dioxygenase.
  
 0.849
SAMN04488119_10411
Methylglutaconyl-CoA hydratase/isohexenylglutaconyl-CoA hydratase.
 
 
  0.841
SAMN04488119_10356
Biotin carboxylase C-terminal domain-containing protein.
  
 
 0.801
SAMN04488119_10478
(2R)-ethylmalonyl-CoA mutase.
    
 0.789
SAMN04488119_1149
Methylmalonyl-CoA mutase.
    
 0.789
SAMN04488119_1049
NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family.
 
     0.770
SAMN04488119_104207
Acyl transferase domain-containing protein.
  
 
 0.759
Your Current Organism:
Oceanicella actignis
NCBI taxonomy Id: 1189325
Other names: Amaricoccus sp. CLW, CGMCC 1.10808 [[Pleomorphobacterium xiamenense]], DSM 22673, DSM 24423 [[Pleomorphobacterium xiamenense]], LMG 25334, LMG 26245 [[Pleomorphobacterium xiamenense]], LMG:25334, LMG:26245 [[Pleomorphobacterium xiamenense]], MCCC 1A06272 [[Pleomorphobacterium xiamenense]], O. actignis, Oceanicella actignis Albuquerque et al. 2012, Pleomorphobacterium xiamenense, Pleomorphobacterium xiamenense Yin et al. 2013, Rhodobacteraceae bacterium CLW, Rhodobacteraceae bacterium PRQ-67, Rhodobacteraceae bacterium PRQ-68, strain CLW [[Pleomorphobacterium xiamenense]], strain PRQ-67
Server load: low (24%) [HD]