STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN04488119_10432Peptide/nickel transport system substrate-binding protein. (490 aa)    
Predicted Functional Partners:
SAMN04488119_10430
Peptide/nickel transport system permease protein.
  0.994
SAMN04488119_10429
Peptide/nickel transport system permease protein.
  0.951
SAMN04488119_10433
Succinyl-diaminopimelate desuccinylase.
 
     0.871
SAMN04488119_10540
Peptide/nickel transport system permease protein.
 
  0.796
SAMN04488119_10353
Dipeptide transport system permease protein.
 
  0.789
SAMN04488119_10541
Peptide/nickel transport system permease protein.
 
  0.777
SAMN04488119_10428
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  0.743
SAMN04488119_102226
Peptide/nickel transport system permease protein.
 
  0.739
SAMN04488119_10427
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
 
     0.690
SAMN04488119_10539
Peptide/nickel transport system ATP-binding protein.
 
 0.683
Your Current Organism:
Oceanicella actignis
NCBI taxonomy Id: 1189325
Other names: Amaricoccus sp. CLW, CGMCC 1.10808 [[Pleomorphobacterium xiamenense]], DSM 22673, DSM 24423 [[Pleomorphobacterium xiamenense]], LMG 25334, LMG 26245 [[Pleomorphobacterium xiamenense]], LMG:25334, LMG:26245 [[Pleomorphobacterium xiamenense]], MCCC 1A06272 [[Pleomorphobacterium xiamenense]], O. actignis, Oceanicella actignis Albuquerque et al. 2012, Pleomorphobacterium xiamenense, Pleomorphobacterium xiamenense Yin et al. 2013, Rhodobacteraceae bacterium CLW, Rhodobacteraceae bacterium PRQ-67, Rhodobacteraceae bacterium PRQ-68, strain CLW [[Pleomorphobacterium xiamenense]], strain PRQ-67
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.