STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN04488119_107138PAS domain S-box-containing protein. (716 aa)    
Predicted Functional Partners:
SAMN04488119_101176
Histidine kinase.
 
0.998
SAMN04488119_103122
Response regulator receiver domain-containing protein.
  
 0.996
SAMN04488119_11219
Uncharacterized protein.
 
0.996
SAMN04488119_10459
Signal transduction histidine kinase.
0.995
SAMN04488119_107139
DNA-binding response regulator, OmpR family, contains REC and winged-helix (WHTH) domain.
 
 0.982
SAMN04488119_10434
PAS domain S-box-containing protein.
 
 
 0.981
SAMN04488119_10252
Signal transduction histidine kinase.
   
 0.979
SAMN04488119_105203
Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
  
  
 0.979
SAMN04488119_102276
Two-component system, cell cycle sensor histidine kinase and response regulator CckA.
 
 
0.974
SAMN04488119_102337
Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL.
 
0.963
Your Current Organism:
Oceanicella actignis
NCBI taxonomy Id: 1189325
Other names: Amaricoccus sp. CLW, CGMCC 1.10808 [[Pleomorphobacterium xiamenense]], DSM 22673, DSM 24423 [[Pleomorphobacterium xiamenense]], LMG 25334, LMG 26245 [[Pleomorphobacterium xiamenense]], LMG:25334, LMG:26245 [[Pleomorphobacterium xiamenense]], MCCC 1A06272 [[Pleomorphobacterium xiamenense]], O. actignis, Oceanicella actignis Albuquerque et al. 2012, Pleomorphobacterium xiamenense, Pleomorphobacterium xiamenense Yin et al. 2013, Rhodobacteraceae bacterium CLW, Rhodobacteraceae bacterium PRQ-67, Rhodobacteraceae bacterium PRQ-68, strain CLW [[Pleomorphobacterium xiamenense]], strain PRQ-67
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.