STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN04488119_10830ABC-2 type transport system permease protein. (376 aa)    
Predicted Functional Partners:
SAMN04488119_10828
HlyD family secretion protein.
 
  
 0.971
SAMN04488119_10829
Ribosome-dependent ATPase.
 
 
 
0.942
SAMN04488119_102507
ABC-2 type transport system ATP-binding protein.
 
 
 0.766
SAMN04488119_110108
ABC-2 type transport system ATP-binding protein.
 
 
 0.664
SAMN04488119_106187
Lipopolysaccharide export system ATP-binding protein.
   
  0.581
SAMN04488119_10831
Capsular exopolysaccharide family.
       0.561
SAMN04488119_10832
Sulfotransferase family protein.
       0.561
SAMN04488119_10833
Serine acetyltransferase.
       0.561
SAMN04488119_10834
O-antigen ligase.
       0.561
SAMN04488119_104207
Acyl transferase domain-containing protein.
  
  
 0.516
Your Current Organism:
Oceanicella actignis
NCBI taxonomy Id: 1189325
Other names: Amaricoccus sp. CLW, CGMCC 1.10808 [[Pleomorphobacterium xiamenense]], DSM 22673, DSM 24423 [[Pleomorphobacterium xiamenense]], LMG 25334, LMG 26245 [[Pleomorphobacterium xiamenense]], LMG:25334, LMG:26245 [[Pleomorphobacterium xiamenense]], MCCC 1A06272 [[Pleomorphobacterium xiamenense]], O. actignis, Oceanicella actignis Albuquerque et al. 2012, Pleomorphobacterium xiamenense, Pleomorphobacterium xiamenense Yin et al. 2013, Rhodobacteraceae bacterium CLW, Rhodobacteraceae bacterium PRQ-67, Rhodobacteraceae bacterium PRQ-68, strain CLW [[Pleomorphobacterium xiamenense]], strain PRQ-67
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.