STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A33Q_0269Hypothetical protein. (195 aa)    
Predicted Functional Partners:
A33Q_0268
Abortive infection protein, putative.
 
     0.951
A33Q_3665
Hypothetical protein.
  
    0.653
A33Q_1794
Hypothetical protein.
  
     0.588
A33Q_0921
TonB-dependent receptor.
  
     0.551
A33Q_2957
Hypothetical protein.
  
     0.448
Your Current Organism:
Indibacter alkaliphilus
NCBI taxonomy Id: 1189612
Other names: I. alkaliphilus LW1, Indibacter alkaliphilus LW1, Indibacter alkaliphilus str. LW1, Indibacter alkaliphilus strain LW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.