STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL19742.1AsnC family protein. (88 aa)    
Predicted Functional Partners:
SDL19773.1
Winged helix-turn-helix DNA-binding.
 
     0.928
SDL16890.1
uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
 
 0.553
SDL79668.1
uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
 
 0.553
SDL19806.1
Cysteine synthase A.
       0.530
SDL19934.1
Transcriptional regulator, AsnC family.
  
     0.526
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
   
 
 0.503
SDL60853.1
Transcriptional regulator, AsnC family.
  
     0.496
SDL19172.1
Transcriptional regulator, AsnC family.
  
     0.434
Your Current Organism:
Halomonas muralis
NCBI taxonomy Id: 119000
Other names: DSM 14789, H. muralis, Halomonas muralis Heyrman et al. 2002, Halomonas sp. LMG-19418, LMG 20969, LMG:20969
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.