STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM49261.1N-methylglutamate dehydrogenase subunit D. (190 aa)    
Predicted Functional Partners:
SHM49299.1
N-methylglutamate dehydrogenase subunit B.
 
 0.999
SHM49277.1
N-methylglutamate dehydrogenase subunit C; Belongs to the GcvT family.
 
 0.998
SHN04233.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 0.997
SHN04244.1
Sarcosine oxidase subunit delta.
 
 0.993
SHM49319.1
N-methylglutamate dehydrogenase subunit A precursor.
 
 0.980
SHN04420.1
Hypothetical protein.
 
 0.927
SHN04255.1
Sarcosine oxidase subunit beta.
 
 0.896
SHM77532.1
Aminomethyltransferase.
  
 0.890
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.890
SHM50658.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
 0.881
Your Current Organism:
Pseudomonas asturiensis
NCBI taxonomy Id: 1190415
Other names: CECT 8095, LMG 26898, LMG:26898, LPPA 221, P. asturiensis, Pseudomonas asturiensis Gonzalez et al. 2013, Pseudomonas sp. LPPA 221, Pseudomonas sp. LPPA 816
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