STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM50730.1Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (342 aa)    
Predicted Functional Partners:
SHM50708.1
Putative spermidine/putrescine transport system permease protein.
 0.981
SHM50693.1
Putative spermidine/putrescine transport system permease protein.
 
 
 0.978
SHM50621.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
 
 0.916
SHM52111.1
Putative spermidine/putrescine transport system permease protein.
 
 0.895
SHM52126.1
Putative spermidine/putrescine transport system permease protein.
 
 0.890
SHN03005.1
Putative spermidine/putrescine transport system permease protein.
 
 0.888
SHN23453.1
Putrescine transport system permease protein.
 
 0.881
SHN23449.1
Putrescine transport system permease protein.
 
 
 0.872
SHN03016.1
Putative spermidine/putrescine transport system permease protein.
 
 0.823
SHM50658.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 
    0.776
Your Current Organism:
Pseudomonas asturiensis
NCBI taxonomy Id: 1190415
Other names: CECT 8095, LMG 26898, LMG:26898, LPPA 221, P. asturiensis, Pseudomonas asturiensis Gonzalez et al. 2013, Pseudomonas sp. LPPA 221, Pseudomonas sp. LPPA 816
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