STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM79181.1Type III secretion system major needle protein, YscF/MxiH/PrgI family. (124 aa)    
Predicted Functional Partners:
SHM79209.1
Type III secretion protein J.
       0.809
SHM79228.1
Hypothetical protein.
       0.809
SHM79161.1
HrpZ protein.
       0.742
SHM79252.1
Type III secretion protein L.
       0.711
SHM79141.1
HrpA pilus formation protein.
       0.560
SHM79316.1
Type III secretion protein C.
       0.524
SHM79292.1
Hypothetical protein.
       0.513
SHM79337.1
Hypothetical protein.
       0.510
SHM79269.1
HrpF protein.
       0.506
SHM79351.1
Hypothetical protein.
       0.506
Your Current Organism:
Pseudomonas asturiensis
NCBI taxonomy Id: 1190415
Other names: CECT 8095, LMG 26898, LMG:26898, LPPA 221, P. asturiensis, Pseudomonas asturiensis Gonzalez et al. 2013, Pseudomonas sp. LPPA 221, Pseudomonas sp. LPPA 816
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.