Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM69781.1 | SHN05783.1 | SAMN05216593_102427 | SAMN05216593_106282 | VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. | Hypothetical protein. | 0.906 |
SHM69781.1 | SHN22628.1 | SAMN05216593_102427 | SAMN05216593_11541 | VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. | Cytochrome oxidase assembly protein ShyY1. | 0.846 |
SHM69781.1 | secY | SAMN05216593_102427 | SAMN05216593_12445 | VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.851 |
SHM71828.1 | SHM90929.1 | SAMN05216593_102519 | SAMN05216593_104274 | NADH dehydrogenase subunit M. | Sulfate permease, SulP family. | 0.879 |
SHM71828.1 | SHN05783.1 | SAMN05216593_102519 | SAMN05216593_106282 | NADH dehydrogenase subunit M. | Hypothetical protein. | 0.924 |
SHM71828.1 | SHN19233.1 | SAMN05216593_102519 | SAMN05216593_11290 | NADH dehydrogenase subunit M. | Sulfate permease, SulP family. | 0.879 |
SHM71828.1 | SHN19591.1 | SAMN05216593_102519 | SAMN05216593_112143 | NADH dehydrogenase subunit M. | NAD(P)H-flavin reductase. | 0.893 |
SHM71828.1 | SHN23774.1 | SAMN05216593_102519 | SAMN05216593_11670 | NADH dehydrogenase subunit M. | CDP-4-dehydro-6-deoxyglucose reductase. | 0.893 |
SHM71828.1 | nuoC | SAMN05216593_102519 | SAMN05216593_102510 | NADH dehydrogenase subunit M. | NADH dehydrogenase subunit C /NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.999 |
SHM90929.1 | SHM71828.1 | SAMN05216593_104274 | SAMN05216593_102519 | Sulfate permease, SulP family. | NADH dehydrogenase subunit M. | 0.879 |
SHM90929.1 | SHN05783.1 | SAMN05216593_104274 | SAMN05216593_106282 | Sulfate permease, SulP family. | Hypothetical protein. | 0.845 |
SHN05783.1 | SHM69781.1 | SAMN05216593_106282 | SAMN05216593_102427 | Hypothetical protein. | VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. | 0.906 |
SHN05783.1 | SHM71828.1 | SAMN05216593_106282 | SAMN05216593_102519 | Hypothetical protein. | NADH dehydrogenase subunit M. | 0.924 |
SHN05783.1 | SHM90929.1 | SAMN05216593_106282 | SAMN05216593_104274 | Hypothetical protein. | Sulfate permease, SulP family. | 0.845 |
SHN05783.1 | SHN19233.1 | SAMN05216593_106282 | SAMN05216593_11290 | Hypothetical protein. | Sulfate permease, SulP family. | 0.845 |
SHN05783.1 | SHN19591.1 | SAMN05216593_106282 | SAMN05216593_112143 | Hypothetical protein. | NAD(P)H-flavin reductase. | 0.856 |
SHN05783.1 | SHN20731.1 | SAMN05216593_106282 | SAMN05216593_11361 | Hypothetical protein. | Serine protease, subtilisin family. | 0.906 |
SHN05783.1 | SHN22628.1 | SAMN05216593_106282 | SAMN05216593_11541 | Hypothetical protein. | Cytochrome oxidase assembly protein ShyY1. | 0.846 |
SHN05783.1 | SHN23774.1 | SAMN05216593_106282 | SAMN05216593_11670 | Hypothetical protein. | CDP-4-dehydro-6-deoxyglucose reductase. | 0.856 |
SHN05783.1 | nuoC | SAMN05216593_106282 | SAMN05216593_102510 | Hypothetical protein. | NADH dehydrogenase subunit C /NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.889 |
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