STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN07679.1Protein of unknown function. (483 aa)    
Predicted Functional Partners:
SHN07695.1
Hypothetical protein.
       0.693
SHN26978.1
Heterokaryon incompatibility protein Het-C.
  
     0.644
SHN13649.1
NmrA-like family protein.
  
     0.619
SHM64171.1
2,4-dichlorophenol 6-monooxygenase.
  
     0.597
SHM64451.1
Hypothetical protein.
  
     0.552
SHN07703.1
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.475
SHM54466.1
Hypothetical protein.
  
     0.473
SHM67585.1
Nitrilase.
  
     0.454
Your Current Organism:
Pseudomonas asturiensis
NCBI taxonomy Id: 1190415
Other names: CECT 8095, LMG 26898, LMG:26898, LPPA 221, P. asturiensis, Pseudomonas asturiensis Gonzalez et al. 2013, Pseudomonas sp. LPPA 221, Pseudomonas sp. LPPA 816
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.