STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN14254.1Two-component system, NtrC family, response regulator PilR. (446 aa)    
Predicted Functional Partners:
SHN14259.1
Two-component system, NtrC family, sensor histidine kinase PilS.
 
 0.984
SHN10151.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.966
SHN11814.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.933
SHM79472.1
Type III secretion protein Q.
  
 
 0.925
SHN12444.1
PAS domain S-box-containing protein.
  
 0.903
SHM77614.1
Two-component system, cell cycle response regulator DivK.
 
 0.890
SHN05633.1
PAS/PAC sensor signal transduction histidine kinase.
 0.890
SHM52956.1
Signal transduction histidine kinase.
  
0.879
SHM53053.1
PAS domain S-box-containing protein.
  
 0.878
SHM91162.1
Hypothetical protein.
  
 0.878
Your Current Organism:
Pseudomonas asturiensis
NCBI taxonomy Id: 1190415
Other names: CECT 8095, LMG 26898, LMG:26898, LPPA 221, P. asturiensis, Pseudomonas asturiensis Gonzalez et al. 2013, Pseudomonas sp. LPPA 221, Pseudomonas sp. LPPA 816
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