STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN17491.1RHS repeat-associated core domain-containing protein. (1730 aa)    
Predicted Functional Partners:
SHN28885.1
Hypothetical protein.
  
 
 0.804
SHN20731.1
Serine protease, subtilisin family.
 
  
 0.696
SHN09224.1
HDOD domain-containing protein.
  
     0.680
SHN30658.1
Hypothetical protein.
  
     0.663
SHN17517.1
Pilin (type 1 fimbria component protein).
  
     0.646
SHN30671.1
Hypothetical protein.
  
     0.643
SHN30662.1
Hypothetical protein.
  
     0.608
SHN17530.1
Outer membrane autotransporter barrel domain-containing protein.
  
    0.604
SHM54221.1
UvrD/REP helicase N-terminal domain-containing protein.
  
   
 0.575
SHN01063.1
Outer membrane autotransporter barrel domain-containing protein.
  
    0.556
Your Current Organism:
Pseudomonas asturiensis
NCBI taxonomy Id: 1190415
Other names: CECT 8095, LMG 26898, LMG:26898, LPPA 221, P. asturiensis, Pseudomonas asturiensis Gonzalez et al. 2013, Pseudomonas sp. LPPA 221, Pseudomonas sp. LPPA 816
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