STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadAD-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids. (433 aa)    
Predicted Functional Partners:
SHN04233.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.978
SHM49277.1
N-methylglutamate dehydrogenase subunit C; Belongs to the GcvT family.
  
 0.927
SHN23108.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
 
  
 0.912
SHN23498.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 
 0.904
SHM50658.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 
 0.903
SHN23113.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.883
SHN04244.1
Sarcosine oxidase subunit delta.
  
 0.850
SHM49299.1
N-methylglutamate dehydrogenase subunit B.
  
 0.834
SHN05441.1
Glutamate synthase (NADPH) large subunit.
  
 
 0.824
SHN04420.1
Hypothetical protein.
  
 0.796
Your Current Organism:
Pseudomonas asturiensis
NCBI taxonomy Id: 1190415
Other names: CECT 8095, LMG 26898, LMG:26898, LPPA 221, P. asturiensis, Pseudomonas asturiensis Gonzalez et al. 2013, Pseudomonas sp. LPPA 221, Pseudomonas sp. LPPA 816
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