STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN26282.1TRAP-type C4-dicarboxylate transport system, small permease component. (175 aa)    
Predicted Functional Partners:
SHN26286.1
TRAP transporter, DctM subunit.
 
 0.995
SHM68764.1
TRAP transporter, DctM subunit.
 
 0.980
SHM64569.1
TRAP-type C4-dicarboxylate transport system, large permease component.
 
 0.974
SHN21060.1
TRAP transporter, DctM subunit.
 
 0.974
SHN26279.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.951
SHM68743.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.877
SHN21065.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.856
SHN21146.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.855
SHM68783.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.650
SHN26290.1
Threonine/homoserine efflux transporter RhtA.
 
     0.622
Your Current Organism:
Pseudomonas asturiensis
NCBI taxonomy Id: 1190415
Other names: CECT 8095, LMG 26898, LMG:26898, LPPA 221, P. asturiensis, Pseudomonas asturiensis Gonzalez et al. 2013, Pseudomonas sp. LPPA 221, Pseudomonas sp. LPPA 816
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