STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN26435.1Alpha-1,3-rhamnosyl/mannosyltransferase. (382 aa)    
Predicted Functional Partners:
SHN26428.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.894
SHN26433.1
GDP-4-dehydro-6-deoxy-D-mannose reductase.
 
 
 0.881
SHN26425.1
O-antigen chain-terminating methyltransferase.
 
     0.850
SHM92122.1
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
 
 0.841
SHN26421.1
Lipopolysaccharide transport system ATP-binding protein.
 
 
 0.833
SHM76581.1
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
 
 
 0.830
SHN26396.1
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
 
 
 0.830
SHM53861.1
Trehalose synthase.
   
 0.791
SHM81563.1
Hypothetical protein.
   
 
 0.779
SHN22089.1
Hypothetical protein.
   
 
 0.779
Your Current Organism:
Pseudomonas asturiensis
NCBI taxonomy Id: 1190415
Other names: CECT 8095, LMG 26898, LMG:26898, LPPA 221, P. asturiensis, Pseudomonas asturiensis Gonzalez et al. 2013, Pseudomonas sp. LPPA 221, Pseudomonas sp. LPPA 816
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