STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN28654.14-aminobutyrate aminotransferase. (968 aa)    
Predicted Functional Partners:
SHN28356.1
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
 
 0.891
SHM78593.1
Branched chain amino acid aminotransferase apoenzyme.
 
 
 0.882
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.876
SHM81209.1
Homoserine dehydrogenase.
    
 0.870
SHN25018.1
4-amino-4-deoxychorismate lyase.
  
 
 0.859
SHM98614.1
Aspartate kinase; Belongs to the aspartokinase family.
  
 
 0.853
SHM96373.1
Aspartate aminotransferase.
 
 0.830
SHM80161.1
2-keto-4-methylthiobutyrate aminotransferase apoenzyme.
 
 0.810
SHM98253.1
3-mercaptopyruvate sulfurtransferase SseA, contains two rhodanese domains.
  
 
  0.809
SHM54639.1
FAD/FMN-containing dehydrogenase.
  
 
 0.808
Your Current Organism:
Pseudomonas asturiensis
NCBI taxonomy Id: 1190415
Other names: CECT 8095, LMG 26898, LMG:26898, LPPA 221, P. asturiensis, Pseudomonas asturiensis Gonzalez et al. 2013, Pseudomonas sp. LPPA 221, Pseudomonas sp. LPPA 816
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