STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN28845.1Type VI secretion system secreted protein Hcp. (162 aa)    
Predicted Functional Partners:
SHN28836.1
Type VI secretion system protein ImpB.
 
 0.999
SHN28840.1
Type VI secretion system protein ImpC.
 
 0.996
SHM51085.1
Type VI secretion system protein ImpC.
 
 0.991
SHN28869.1
Type VI secretion system protein ImpH.
 
 
 0.986
SHM51052.1
Type VI secretion system protein ImpB.
 
 0.979
SHN28830.1
Type VI secretion system protein ImpA.
 
 
 0.972
SHN28875.1
Type VI secretion system protein VasG; Belongs to the ClpA/ClpB family.
 
 
 0.957
SHN28804.1
Type VI secretion system protein ImpK.
 
  
 0.956
SHN28858.1
Type VI secretion system protein ImpF.
 
  
 0.951
SHN28879.1
Type VI secretion system secreted protein VgrG.
 
  
 0.949
Your Current Organism:
Pseudomonas asturiensis
NCBI taxonomy Id: 1190415
Other names: CECT 8095, LMG 26898, LMG:26898, LPPA 221, P. asturiensis, Pseudomonas asturiensis Gonzalez et al. 2013, Pseudomonas sp. LPPA 221, Pseudomonas sp. LPPA 816
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.