STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MY04_4903SusC-like TonB-dependent receptor. (1024 aa)    
Predicted Functional Partners:
MY04_4902
RagB/SusD domain-containing protein.
 
 
   0.958
MY04_2651
RagB/SusD domain protein.
 
 
   0.793
MY04_4535
RagB/SusD domain protein.
 
 
   0.792
MY04_5285
RagB/SusD domain protein.
 
 
   0.791
MY04_5163
RagB/SusD domain protein.
 
 
   0.789
MY04_1909
RagB/SusD domain protein.
 
 
   0.788
MY04_3998
RagB/SusD family protein.
 
 
   0.788
MY04_5394
RagB/SusD domain protein.
 
 
   0.788
MY04_5229
Putative outer membrane protein; Probably involved in nutrient binding protein.
 
 
   0.787
MY04_4066
RagB/SusD domain protein.
  
 
   0.786
Your Current Organism:
Flammeovirga sp. MY04
NCBI taxonomy Id: 1191459
Other names: F. sp. MY04, Flammeovirga sp. CGMCC 2777
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