MROS_0184 protein (Melioribacter roseus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MROS_0184

Hypothetical protein. (98 aa)

Predicted Functional Partners:

MROS_0183

0.773

deoB

0.773

MROS_0186

0.773

MROS_0182

0.603

MROS_0181

0.599

engB

0.598

MROS_0179

0.572

MROS_0180

0.572

rplQ

0.438

fumC

0.432

Your Current Organism:

Melioribacter roseus

NCBI taxonomy Id: 1191523
Other names: M. roseus P3M-2, Melioribacter roseus P3M-2, Melioribacter roseus str. P3M-2, Melioribacter roseus strain P3M-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MROS_0179	MROS_0180	MROS_0179	MROS_0180	Spr gene product.	RNA polymerase, sigma 70 subunit, rpod subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.796
MROS_0179	MROS_0181	MROS_0179	MROS_0181	Spr gene product.	Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.	0.737
MROS_0179	MROS_0182	MROS_0179	MROS_0182	Spr gene product.	Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.	0.731
MROS_0179	MROS_0183	MROS_0179	MROS_0183	Spr gene product.	Hypothetical protein.	0.579
MROS_0179	MROS_0184	MROS_0179	MROS_0184	Spr gene product.	Hypothetical protein.	0.572
MROS_0179	MROS_0186	MROS_0179	MROS_0186	Spr gene product.	Diguanylate cyclase.	0.651
MROS_0179	deoB	MROS_0179	MROS_0185	Spr gene product.	Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.	0.572
MROS_0179	engB	MROS_0179	MROS_0187	Spr gene product.	Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.	0.452
MROS_0179	fumC	MROS_0179	MROS_0178	Spr gene product.	Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	0.601
MROS_0180	MROS_0179	MROS_0180	MROS_0179	RNA polymerase, sigma 70 subunit, rpod subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Spr gene product.	0.796
MROS_0180	MROS_0181	MROS_0180	MROS_0181	RNA polymerase, sigma 70 subunit, rpod subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.	0.737
MROS_0180	MROS_0182	MROS_0180	MROS_0182	RNA polymerase, sigma 70 subunit, rpod subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.	0.731
MROS_0180	MROS_0183	MROS_0180	MROS_0183	RNA polymerase, sigma 70 subunit, rpod subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Hypothetical protein.	0.572
MROS_0180	MROS_0184	MROS_0180	MROS_0184	RNA polymerase, sigma 70 subunit, rpod subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Hypothetical protein.	0.572
MROS_0180	MROS_0186	MROS_0180	MROS_0186	RNA polymerase, sigma 70 subunit, rpod subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Diguanylate cyclase.	0.762
MROS_0180	deoB	MROS_0180	MROS_0185	RNA polymerase, sigma 70 subunit, rpod subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.	0.627
MROS_0180	engB	MROS_0180	MROS_0187	RNA polymerase, sigma 70 subunit, rpod subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.	0.497
MROS_0180	fumC	MROS_0180	MROS_0178	RNA polymerase, sigma 70 subunit, rpod subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	0.634
MROS_0180	rplQ	MROS_0180	MROS_0188	RNA polymerase, sigma 70 subunit, rpod subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Ribosomal protein L17.	0.432
MROS_0181	MROS_0179	MROS_0181	MROS_0179	Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.	Spr gene product.	0.737