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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP_0017Putative Ecf-type RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (206 aa)    
Predicted Functional Partners:
CAP_2982
ECF-family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
CAP_5108
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.768
CAP_4429
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.759
CAP_6604
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.753
CAP_0016
Hypothetical protein.
       0.750
CAP_3151
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.727
CAP_7379
Hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.693
CAP_8256
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.600
CAP_1930
Sigma-24 protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.541
CAP_3875
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.479
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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