Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CAP_0089Serine/threonine-protein kinase Pkn6. (512 aa)    
Predicted Functional Partners:
CAP_3227
Hypothetical protein.
  
     0.761
CAP_0111
Serine/threonine protein kinase.
  
     0.747
CAP_5915
Protein kinase.
  
     0.738
CAP_3430
Protein kinase.
  
     0.725
CAP_1344
Serine/threonine protein kinase.
  
     0.701
CAP_0795
Hypothetical protein.
  
     0.665
CAP_6676
Hypothetical protein.
  
     0.515
CAP_0087
Hypothetical protein.
       0.487
CAP_5117
Hypothetical protein.
  
 
   0.419
CAP_2412
Hypothetical protein.
    
 0.412
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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