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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP_0107Twitching motility protein PilT. (389 aa)    
Predicted Functional Partners:
CAP_0108
Type IV fimbrial assembly, ATPase PilB.
 
  
0.858
CAP_3012
Type IV fimbrial assembly protein PilC.
 
  
 0.829
CAP_4882
Leader peptidase (Prepilin peptidase); Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.816
CAP_3050
Type IV pilus biogenesis protein PilM.
 
   
 0.805
CAP_6346
Type IV fimbrial assembly protein PilC.
 
  
 0.805
CAP_3372
Type IV fimbrial assembly, ATPase PilB.
 
  
 0.768
CAP_0109
Hypothetical protein.
       0.545
CAP_3054
Type IV pilus biogenesis protein PilQ.
 
   
 0.539
lexA
SOS-response repressor and protease LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
       0.465
CAP_5693
Two-component hybrid sensor and regulator.
     
 0.440
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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