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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP_0389ThiJ/PfpI. (232 aa)    
Predicted Functional Partners:
CAP_0487
Transcriptional regulator, AraC family.
  
  
 
0.771
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.675
CAP_6563
Hypothetical protein.
  
    0.593
CAP_0390
Hypothetical protein.
       0.543
CAP_8765
ADA regulatory protein.
  
 
  0.529
CAP_0388
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
  
 0.501
CAP_0386
Hypothetical protein.
       0.479
CAP_0387
Putative transcriptional regulator, MerR family.
       0.479
CAP_0391
Hypothetical protein.
       0.412
CAP_0502
Isochorismatase.
 
    0.402
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.