Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CAP_0816Internalin, putative. (1053 aa)    
Predicted Functional Partners:
CAP_0814
Outer membrane protein OmpA.
 
 
   0.784
CAP_8910
Hypothetical protein.
  
   0.662
CAP_8671
Flagellar hook-length control protein FliK.
  
     0.634
CAP_0060
Hypothetical protein.
  
     0.600
CAP_4701
Hypothetical protein.
  
     0.596
CAP_2302
Serine/threonine protein kinase.
  
    0.572
CAP_8174
Hypothetical protein.
  
     0.565
CAP_1646
Hypothetical protein.
  
     0.561
CAP_1523
Serine/threonine protein kinase.
  
    0.552
CAP_3696
Inner spore coat protein H.
  
    0.551
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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