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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP_1144Metalloendopeptidase membrane protein. (267 aa)    
Predicted Functional Partners:
CAP_7473
Hypothetical protein.
 
   
 0.739
CAP_3095
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
    0.620
CAP_7179
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.474
CAP_0952
Soluble lytic murein transglycosylase precursor.
 
   
 0.465
CAP_7928
Competence protein ComL precursor.
   
  
 0.464
CAP_1143
Capsule biosynthesis protein capA.
       0.463
CAP_0375
Soluble lytic murein transglycosylase precursor.
 
   
 0.453
CAP_3360
Metalloendopeptidase Membrane protein.
 
   
 0.452
CAP_6738
Multimodular transpeptidase-transglycosylase.
 
   
 0.415
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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