close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP_1185Carotenoid cis-trans isomerase. (534 aa)    
Predicted Functional Partners:
CAP_5686
Putative geranylgeranyl-diphosphate geranylgeranyltransferase.
 
 
 0.902
CAP_3203
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.776
CAP_1187
Hypothetical protein.
 
     0.772
CAP_3220
Hypothetical protein.
  
     0.772
CAP_3219
Hypothetical protein.
  
     0.769
CAP_7211
Hypothetical protein.
  
     0.738
CAP_5215
Phytoene synthase.
  
 
 0.737
CAP_2428
Hypothetical protein.
  
     0.735
CAP_7006
Hypothetical protein.
  
     0.735
CAP_5144
dedA protein.
  
     0.731
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.