Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CAP_1371DedA protein. (262 aa)    
Predicted Functional Partners:
CAP_8302
DedA family protein.
  
   
 0.743
CAP_7232
Hypothetical protein; Belongs to the MtfA family.
  
  
 0.677
CAP_1372
Long-chain-fatty-acid--CoA ligase.
       0.476
CAP_7055
Alcohol dehydrogenase.
   
    0.441
CAP_7082
Muramoyltetrapeptide carboxypeptidase.
  
    0.415
CAP_2866
Cell division protein FtsX.
   
    0.414
CAP_4025
Macrolide export ATP-binding/permease protein MacB.
   
    0.414
CAP_4198
Macrolide export ATP-binding/permease protein MacB.
   
    0.414
CAP_0743
Hypothetical protein.
 
     0.408
CAP_2542
Hypothetical protein.
 
     0.408
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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