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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP_2076Carboxylesterase, type B; Belongs to the type-B carboxylesterase/lipase family. (540 aa)    
Predicted Functional Partners:
CAP_8139
NADP-dependent malic enzyme.
     
 0.764
rpsD
SSU ribosomal protein S4p (S9e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.763
rpsK
SSU ribosomal protein S11p (S14e); Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.733
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.731
CAP_5982
Hypothetical protein.
 
 
 0.603
CAP_1339
Malonyl CoA-acyl carrier protein transacylase.
   
 0.539
CAP_7848
ATP-dependent helicase HrpB.
    
 0.522
CAP_8977
ATP-dependent helicase HrpA.
    
 0.522
CAP_5326
Ribonuclease D.
    
  0.519
CAP_0190
Hypothetical protein; Belongs to the glycosyl hydrolase 31 family.
  
  
 0.510
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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