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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP_2420tRNA nucleotidyltransferase. (165 aa)    
Predicted Functional Partners:
CAP_2418
Hypothetical protein.
 
     0.933
CAP_2419
Hypothetical protein.
       0.742
CAP_4816
Hypothetical protein.
  
     0.733
CAP_1809
Hypothetical protein.
  
    0.690
CAP_7219
Sigma-54 dependent transcriptional regulator.
  
    0.677
CAP_6876
Hypothetical protein.
   
    0.616
CAP_3455
Hypothetical protein.
  
     0.610
CAP_5184
Hypothetical protein.
  
     0.557
CAP_4577
Hypothetical protein.
  
     0.550
CAP_1670
CAAX amino terminal protease family.
  
     0.549
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.