Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CAP_2727Hypothetical protein. (420 aa)    
Predicted Functional Partners:
CAP_2726
ComA operon protein 2.
       0.779
CAP_0730
4-hydroxybenzoate transporter.
  
   
 0.762
CAP_2728
Hypothetical protein.
       0.695
CAP_1855
Hypothetical protein.
  
     0.591
CAP_2498
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.554
CAP_7846
Chorismate mutase I.
  
 
 0.517
CAP_8113
Kelch domain protein.
  
     0.501
CAP_7574
Dicarboxylic acid transporter PcaT.
  
   
 0.479
CAP_4856
L-Proline/Glycine betaine transporter ProP.
  
     0.477
CAP_0704
Glycerol-3-phosphate transporter.
  
 
 0.467
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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