Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CAP_2859Serine protease precursor MucD/AlgY associated with sigma factor RpoE. (341 aa)    
Predicted Functional Partners:
CAP_1556
HtrA protease/chaperone protein.
  
  
 
0.675
CAP_2858
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.675
CAP_2857
Hypothetical protein.
       0.674
CAP_2144
HtrA family serine protease.
  
  
  0.673
CAP_2502
Serine protease precursor MucD/AlgY associated with sigma factor RpoE; Belongs to the peptidase S1C family.
  
  
 
0.657
CAP_3910
Protease Do.
  
  
 
0.639
CAP_2856
Hypothetical protein.
       0.621
CAP_2860
Conserved cytosolic protein.
       0.568
rpsQ
SSU ribosomal protein S17p (S11e); One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
 
   0.566
CAP_5693
Two-component hybrid sensor and regulator.
  
  
 0.563
Your Current Organism:
Chondromyces apiculatus
NCBI taxonomy Id: 1192034
Other names: C. apiculatus DSM 436, Chondromyces apiculatus Cm a2, Chondromyces apiculatus DSM 436, Chondromyces apiculatus str. DSM 436, Chondromyces apiculatus strain DSM 436
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